Biology, Medicine and Bioinformatics MCP Servers

MCP Server that connects AI agents to FHIR servers

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.

MCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.

real-time access to 1000 Genomes Project dataset

Biomedical research MCP server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.

Multi-agent MCP server for genomic analysis — specialized AI agents analyze raw DNA files across 16 databases (ClinVar, GWAS, gnomAD, CPIC, AlphaMissense, and more) and coordinate findings through shared MCP tools. Privacy-first, runs locally.

MCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.

An MCP server that provides access to medical information, drug databases, and healthcare resources. Enables AI assistants to query medical data, drug interactions, and clinical guidelines.

Healthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER, claims validation, denial-risk scoring, HIPAA compliance auditing, and NPI/drug enrichment. 20 tools, 10 free credits then pay-per-call via credits or anonymous USDC (x402). `npx @mymedi-ai/mcp-server`

The only MCP server bridging DICOM, HL7v2, and FHIR in one package. Cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding (GE, Siemens, Philips), and integration pattern knowledge. Built by a 19-year healthcare IT veteran. `pip install dicom-hl7-mcp`

MCP server to interact with the BioThings API, including genes, genetic variants, drugs, and taxonomic information.

MCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular `gget` library.

MCP server for a queryable database for aging and longevity research from the OpenGenes project.

MCP server for the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.

HEOR (Health Economics and Outcomes Research) MCP server with 7 tools for literature search across 41 medical data sources (PubMed, NICE, CADTH, ICER, etc.), cost-effectiveness modeling (Markov/PartSA/PSA), and HTA dossier preparation for pharmaceutical and biotech teams.

Map clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.

Taiwan's first public MCP server for National Health Insurance (NHI) data — 234 rejection codes, 1,497 ICD-10→procedure mappings across 20 specialties, audit indicators (008/014/027/P043), and semantic wiki search over 8,232 chunks of official NHI documentation. Powered by [OPDSTAR](https://opdstar.com). Install: `npx @opdstar/nhi-mcp`.

Clinical research MCP server for trial coordinators and life sciences teams. Real-time access to PubMed (35M+ papers) and ClinicalTrials.gov (400K+ trials). No API key required.

An MCP server that provides access to exported data from Apple Health. Data analytics included.

Sleep disruption cause classifier using The Longevity Vault's 5-cause framework. Identifies the biological mechanism behind 3am wakeups from symptom descriptions, with tracked links to the full interactive 3AM Decoder.

Model Context Protocol server for Fast Healthcare Interoperability Resources (FHIR) APIs. Provides seamless integration with FHIR servers, enabling AI assistants to search, retrieve, create, update, and analyze clinical healthcare data with SMART-on-FHIR authentication support.